PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG046400.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 309aa    MW: 32390.8 Da    PI: 8.2852
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG046400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.48e-06172217454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          a n+r r RR+++ +++  L++l+ +      +K + a++L +A  YI+ L
  Pavir.9NG046400.3.p 172 ATNKRPRVRREKLGERIIALQQLVSPF-----GKSDTASVLHEALGYIRFL 217
                          679***********************8.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.449168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-11172232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-5174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.33E-5174222No hitNo description
Gene3DG3DSA:4.10.280.102.7E-7174222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MVKEEEIVAQ AGGRAYMDLL GLGEEDYLLC LSPSSYFSSS VVSTTTTTTS ATPAAAASPT  60
CASYLDPAPA YHHMLSFAGQ EQYHGGDVVF GFQYHGGDQA AIPVAVPQKS SPTTECSSSI  120
SSMSSSPPAT TISAISSPKP QGFKKKGSRS SDQRKAAPAA AVAHAATATG AATNKRPRVR  180
REKLGERIIA LQQLVSPFGK SDTASVLHEA LGYIRFLHDQ VQVRCLLKYP LSMVSGHSSS  240
ILSLLVDTTI QTGAVHNASY SLPAMSMHPS NVCIFRVYAP ACTVTAAAGL VHVTVWDLLA  300
PVAFCVRP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466417.12e-93hypothetical protein SORBIDRAFT_01g007440
TrEMBLC5X0622e-93C5X062_SORBI; Putative uncharacterized protein Sb01g007440
STRINGSb01g007440.17e-93(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.14e-20bHLH family protein